pubmed

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Use this skill when you need to work with pubmed through its generated async Python app, call its MCP-backed functions from code, or inspect available functions with the mcp-skill CLI.

2installs

Sourcemanojbajaj95/mcp-skill

Added on2026-03-14

NPX Install

npx skill4agent add manojbajaj95/mcp-skill pubmed

SKILL.md Content

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pubmed

Use this skill when you need to work with pubmed through its generated async Python app, call its MCP-backed functions from code, or inspect available functions with the mcp-skill CLI.

Authentication

No authentication required.

python

app = PubmedApp()

Passing an

auth

argument is accepted but has no effect and will emit a warning.

Dependencies

This skill requires the following Python packages:

```
mcp-skill
```

Install with uv:

bash

uv pip install mcp-skill

Or with pip:

bash

pip install mcp-skill

Python Usage

Use the generated app directly in async Python code:

python

import asyncio
from pubmed.app import PubmedApp


async def main():
    app = PubmedApp()
    result = await app.search_articles(query="example", max_results=1, sort="example")
    print(result)


asyncio.run(main())

Async Usage Notes

Every generated tool method is
```
async
```
, so call it with
```
await
```
.
Use these apps inside an async function, then run that function with
```
asyncio.run(...)
```
if you are in a script.
If you forget
```
await
```
, you will get a coroutine object instead of the actual tool result.
Be careful when mixing this with other event-loop environments such as notebooks, web servers, or async frameworks.

Discover Functions with the CLI

Use the CLI to find available apps, list functions on an app, and inspect a function before calling it:

bash

uvx mcp-skill list-apps
uvx mcp-skill list-functions pubmed
uvx mcp-skill inspect pubmed search_articles

Important: Add

.agents/skills

to your Python path so imports resolve correctly:

python

import sys
sys.path.insert(0, ".agents/skills")
from pubmed.app import PubmedApp

Or set the

PYTHONPATH

environment variable:

bash

export PYTHONPATH=".agents/skills:$PYTHONPATH"

Preferred: use
uv run
(handles dependencies automatically):

bash

PYTHONPATH=.agents/skills uv run --with mcp-skill python -c "
import asyncio
from pubmed.app import PubmedApp

async def main():
    app = PubmedApp()
    result = await app.search_articles(query="example", max_results=1, sort="example")
    print(result)

asyncio.run(main())
"

Alternative: use
python
directly (install dependencies first):

bash

pip install mcp-skill
PYTHONPATH=.agents/skills python -c "
import asyncio
from pubmed.app import PubmedApp

async def main():
    app = PubmedApp()
    result = await app.search_articles(query="example", max_results=1, sort="example")
    print(result)

asyncio.run(main())
"

pubmed

NPX Install

Tags

SKILL.md Content

pubmed

Authentication

Dependencies

Python Usage

Async Usage Notes

Discover Functions with the CLI