Multi-Node Slurm
Convert single-node
uv run python -m torch.distributed.run
commands into multi-node Slurm sbatch scripts with Enroot container support, and debug common multi-node failures.
Two Approaches: srun-native vs uv run torch.distributed
| Approach | | Process spawning | Best for |
|---|
| srun-native (preferred) | 8 | Slurm spawns 8 tasks/node | Conversion, inference, Bridge scripts |
| uv run torch.distributed (legacy) | 1 | uv run python -m torch.distributed.run
spawns 8 procs/node | MLM pretrain_gpt.py |
Prefer srun-native — simpler, avoids shell escaping issues with TRAIN_CMD. Megatron Bridge auto-derives
,
,
,
,
from SLURM env vars (
,
,
,
) via
helpers called during
distributed init, so you never need to set them manually.
Cluster Environment
Container
bash
CONTAINER_IMAGE="<PATH_TO_YOUR_CONTAINER>.sqsh"
CONTAINER_MOUNTS="<SHARED_FS>:<SHARED_FS>,<PATH_TO_MEGATRON_BRIDGE>:/opt/Megatron-Bridge,<PATH_TO_DATA>:/opt/data"
Standard Paths
bash
WORKDIR="/opt/Megatron-Bridge"
DATA_PATH="<PATH_TO_PREPROCESSED_DATA>/dclm_01_01_text_document"
Tokens / Caches
bash
export GH_TOKEN=<YOUR_GITHUB_TOKEN>
export HF_TOKEN=<YOUR_HF_TOKEN>
export HF_HOME=<SHARED_FS>/HF_HOME
export UV_CACHE_DIR="<SHARED_FS>/uv_cache"
export NEMO_HOME="<SHARED_FS>/cache/nemo"
Important:
must point to a shared filesystem (e.g. Lustre) for multi-node SFT/PEFT jobs.
The default (
) is container-local and not shared across nodes.
Without this, packed-sequence data files prepared on node 0 are invisible to other
nodes, causing
TypeError: 'NoneType' object is not an iterator
.
Log Directory
text
<SHARED_FS>/logs/<job_name>_<suffix>
srun-native Approach (Preferred)
Slurm spawns all processes directly. No
, no TRAIN_CMD escaping.
SBATCH Headers
bash
#SBATCH --job-name=<model>-<task>
#SBATCH --nodes=<NNODES>
#SBATCH --ntasks-per-node=8 # Slurm spawns 8 tasks per node
#SBATCH --gpus-per-node=8
#SBATCH --time=00:30:00
#SBATCH --account=<YOUR_ACCOUNT>
#SBATCH --partition=batch
#SBATCH --output=<SHARED_FS>/logs/<job_name>_%j.log
#SBATCH --exclusive
Build and Launch
Two-phase srun: first a single-process srun to populate the uv cache, then the full multi-node srun.
bash
# Env exports at sbatch level (before srun)
export TORCH_NCCL_AVOID_RECORD_STREAMS=1
export NCCL_NVLS_ENABLE=0
# Phase 1: Single-process uv sync to build/populate the shared cache
srun --mpi=pmix -N 1 --ntasks=1 \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "cd $WORKDIR && uv sync"
# Phase 2: Full multi-node run (uv sync is a fast no-op since cache is warm)
srun --mpi=pmix \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "cd $WORKDIR && uv sync && uv run --no-sync python <script.py> <args>"
srun-native Key Points
- Phase 1 runs once on a single node/process, building all wheels into the shared cache on Lustre
- Phase 2's is a fast no-op (everything is cached) — safe to run on all ranks without sleep guards
- + auto-set , , , , from SLURM env vars
- Env vars like , , exported at sbatch level are inherited by srun tasks
- Reference:
examples/models/glm/glm_45v/slurm_sft.sh
, examples/models/minimax/minimax_m2/slurm_conversion.sh
uv run torch.distributed Approach (Legacy)
Use when the script requires
(e.g., MLM pretrain_gpt.py) or when Bridge's
is not in the call path.
1. Add SBATCH Headers
bash
#SBATCH --job-name=<model>-<framework>
#SBATCH --nodes=<NNODES>
#SBATCH --ntasks-per-node=1 # ALWAYS 1 — torchrun handles per-node spawning
#SBATCH --gpus-per-node=8
#SBATCH --time=00:30:00
#SBATCH --account=<YOUR_ACCOUNT>
#SBATCH --partition=batch
#SBATCH --output=<SHARED_FS>/logs/<job_name>_%j.log
#SBATCH --exclusive
Critical:
, NOT 8.
uv run python -m torch.distributed.run --nproc_per_node=8
spawns 8 processes per node. Using
causes EADDRINUSE port collisions (8 tasks x 8 procs = 64 per node).
2. Convert to Multi-Node
Replace single-node:
bash
uv run python -m torch.distributed.run --nproc_per_node=8 \
<script> <args>
With multi-node (inside
string):
bash
uv run python -m torch.distributed.run \
--nproc_per_node=8 \
--nnodes=\${SLURM_JOB_NUM_NODES} \
--node_rank=\${SLURM_NODEID} \
<script> <args>
and
are auto-derived from SLURM env vars by
/
— no need to set them.
3. Wrap in TRAIN_CMD + two-phase srun
Use the same two-phase pattern: first a single-process srun to warm the uv cache, then the full run.
Environment exports go inside TRAIN_CMD (they must be set inside the container):
bash
TRAIN_CMD="
export CUDA_DEVICE_MAX_CONNECTIONS=1 && \
export NVTE_ALLOW_NONDETERMINISTIC_ALGO=1 && \
export PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True && \
export NCCL_NVLS_ENABLE=0 && \
export GH_TOKEN=$GH_TOKEN && \
export HF_TOKEN=$HF_TOKEN && \
export HF_HOME=$HF_HOME && \
export UV_CACHE_DIR=$UV_CACHE_DIR && \
wandb login \$WANDB_API_KEY && \
mkdir -p $LOGDIR && \
cd $WORKDIR && \
uv sync && \
<training command here>
"
4. Launch (two-phase)
bash
# Phase 1: Single-process uv sync to build/populate the shared cache
srun --mpi=pmix -N 1 --ntasks=1 \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "cd $WORKDIR && uv sync"
# Phase 2: Full multi-node run (uv sync in TRAIN_CMD is a fast no-op)
srun --mpi=pmix --no-kill \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "$TRAIN_CMD" 2>&1 | tee "$LOGDIR/<prefix>_${SLURM_JOB_ID}.log"
5. (Optional) Add Loss Extraction Footer
bash
echo "======================================"
echo "Done. Losses:"
echo "======================================"
grep -E "iteration\s+" "$LOGDIR/<prefix>_${SLURM_JOB_ID}.log" | grep -iE "lm loss|reduced_train_loss" | head -25
Interactive GPU Allocation ( + )
For ad-hoc testing (inference, conversion debugging), always follow these 3 steps:
Step 1: Allocate the node
bash
salloc --account <YOUR_ACCOUNT> -N 1 \
-J <YOUR_ACCOUNT>-debug \
-p interactive --gpus-per-node=8 -t 240
Step 2: Launch container shell
bash
srun --mpi=pmix --no-kill \
--container-image $CONTAINER_IMAGE \
--container-mounts $CONTAINER_MOUNTS \
--account <YOUR_ACCOUNT> -N 1 \
-J <YOUR_ACCOUNT>-debug \
--no-container-mount-home --gpus-per-node=8 \
-p interactive --pty bash
Step 3: Set up environment inside container
bash
export GH_TOKEN=<YOUR_GITHUB_TOKEN>
wandb login <YOUR_WANDB_KEY>
export HF_TOKEN=<YOUR_HF_TOKEN>
export HF_HOME=<SHARED_FS>/HF_HOME
export UV_CACHE_DIR="<SHARED_FS>/uv_cache"
export NEMO_HOME="<SHARED_FS>/cache/nemo"
uv sync
Then run commands with
(uses the synced virtualenv):
bash
uv run python -m torch.distributed.run --nproc_per_node=8 \
examples/conversion/hf_to_megatron_generate_text.py \
--hf_model_path <org>/<model> --prompt "What is AI?" --max_new_tokens 50 --ep 8
Pitfalls with interactive allocation:
| Error | Cause | Fix |
|---|
Cannot find GPU specification
| Missing | Always include in both and |
invalid partition specified: pool0
| Wrong partition name | Use for interactive, for sbatch. Check: |
Invalid account or account/partition combination
| Partition not available for account | Check combos: sacctmgr -nP show assoc where user=$USER format=account,partition
|
Unable to create step for job... Requested node configuration is not available
| conflicts with allocation | Remove flag — HF cache is on shared filesystem, accessible from any node |
| inside container | Container doesn't have pre-installed | Use a container with pre-installed, or |
| during or | Container's is full | Redirect: export UV_CACHE_DIR=<SHARED_FS>/uv_cache
|
ModuleNotFoundError: No module named 'megatron.core.activations'
| Container's pre-installed megatron-core conflicts with local | Install local: pip install -e 3rdparty/Megatron-LM --no-deps --no-build-isolation
|
Debugging Multi-Node Failures
Quick Diagnosis
Check the log for these patterns (in order):
bash
# 1. Find the actual error (filter noise)
grep -a 'Error\|OOM\|CUDA out of memory\|FAILED\|Killed' job.log \
| grep -v 'UserWarning\|AllocatorConfig\|transformer_engine\|frame\|srun: error'
# 2. Check which rank crashed first
grep -a 'Failures:' -A 20 job.log | head -25
# 3. Check for NCCL timeout
grep -a 'ncclUniqueId\|timeout\|crash on rank 0' job.log | head -5
Debugging Checklist
When a multi-node job fails:
- Check exit code: 1 = Python error, 9 = OOM killed, 143 = SIGTERM (timeout or cascade)
- Find first failure: Which task/node crashed first? Others get SIGTERM (143) as cascade
- grep the actual error: Filter out UserWarnings, NCCL frame dumps
- Check rank 0 specifically: Most save/export errors happen on rank 0
- Verify EP sizing: For MoE models, ensure fits in GPU memory with headroom
- Try interactive first: Use
salloc -N 2 -p interactive
to iterate faster than sbatch queue
NCCL Timeout at — "crash on rank 0"
Symptom: All ranks on node 2+ show:
text
[rank8] is setting up NCCL communicator and retrieving ncclUniqueId from [0]
... wait timeout after 600000ms
This may indicate a possible application crash on rank 0
Root causes (check in order):
| Cause | How to verify | Fix |
|---|
| hangs on rank 0 | Error is in → | Increase timeout: init_process_group("nccl", timeout=timedelta(minutes=60))
|
| in custom model code | | Catch in (see below) |
| Rank 0 OOM during export | grep 'OutOfMemory' job.log
| Increase EP or nodes |
| Network issue between nodes | Error only on cross-node ranks | Check , try different nodes |
The problem: When
, rank 0 runs
(downloads tokenizer, config, custom modeling code) while all other ranks skip directly to
. If
is slow or crashes, other ranks timeout.
Fix for ImportError in save_artifacts (
):
python
# Change:
except OSError:
pass
# To:
except (OSError, ImportError):
pass
OOM for MoE Models
Symptom:
torch.OutOfMemoryError: CUDA out of memory
during model loading or forward pass.
Key insight: TP does NOT reduce expert memory. Only EP splits experts across GPUs.
Sizing formula:
text
experts_per_gpu = num_experts / EP
expert_memory_gb ≈ experts_per_gpu * expert_params * 2 / 1e9 (bf16)
total_per_gpu ≈ expert_memory_gb + attention_memory_gb + kv_cache_gb
MiniMax-M2 example (256 experts, ~230GB fp8 → ~460GB bf16):
| Config | Nodes | GPUs | Experts/GPU | Result |
|---|
| TP=2, EP=4 | 1 | 8 | 64 | OOM (too many experts) |
| TP=2, EP=8 | 2 | 16 | 32 | Works for roundtrip (weight-only), OOM for inference |
| TP=1, EP=16 | 2 | 16 | 16 | Works for inference |
| TP=2, EP=32 | 8 | 64 | 8 | Comfortable for training |
Rules of thumb:
- Roundtrip (weight-only): can use more experts per GPU (~60GB model params OK)
- Inference (forward pass + KV cache): needs headroom (~40GB model params max)
- Training (activations + optimizer): needs even more headroom (~30GB model params max)
ModuleNotFoundError: No module named 'megatron.core.tensor_parallel'
Cause: Container's pre-installed megatron-core conflicts with local
.
bash
CMD="if [ \"\$SLURM_LOCALID\" -eq 0 ]; then uv sync; else sleep 10; fi && "
CMD="${CMD}uv run --no-sync python <script> <args>"
FP8 Weight Mismatch in Roundtrip
Symptom: Roundtrip completes but shows ❌ for all expert weights and raises
ValueError: Weight mismatch detected
.
Cause: Original HF weights are FP8, Megatron stores in BF16. Exported weights are BF16. Comparison against original FP8 exceeds
.
This is expected for FP8 models. The conversion is correct; the comparison tolerance is insufficient for the FP8→BF16 precision gap.
Not Set with srun
Symptom: Script exits with "must be launched with torchrun".
Cause: Scripts check
os.environ.get("WORLD_SIZE")
which torchrun sets but srun doesn't.
python
if os.environ.get("WORLD_SIZE") is None and os.environ.get("SLURM_NTASKS") is None:
sys.exit(1)
Bridge's
helpers (called by
) populate env vars from SLURM:
python
if "RANK" not in os.environ:
os.environ["RANK"] = str(get_rank_safe()) # uses SLURM_PROCID
if "WORLD_SIZE" not in os.environ:
os.environ["WORLD_SIZE"] = str(get_world_size_safe()) # uses SLURM_NTASKS
if "MASTER_ADDR" not in os.environ:
os.environ["MASTER_ADDR"] = get_master_addr_safe() # parses SLURM_NODELIST
if "MASTER_PORT" not in os.environ:
os.environ["MASTER_PORT"] = str(get_master_port_safe()) # derives from SLURM_JOB_ID
Key Gotchas
-
Two-phase srun for : Run a single-process srun first to warm the cache, then the full multi-node srun. The second
is a fast no-op since everything is already cached on the shared filesystem.
-
--no-container-mount-home
is an
flag, NOT an
directive.
-
Escaping inside TRAIN_CMD: Since
is a double-quoted string, escape inner
for Slurm variables that must expand at runtime (not sbatch time):
- , ,
- Host-side variables like , , expand at sbatch time — no escaping needed.
-
Bridge : Add before training to avoid stale checkpoint auto-resume.
-
MLM needs PYTHONPATH: For pretrain_gpt.py scripts, add inside TRAIN_CMD:
bash
PYTHONPATH=${WORKDIR}/3rdparty/Megatron-LM:\${PYTHONPATH:-} \
-
Node count heuristic: Total GPUs =
. Must satisfy:
TP * PP * EP * DP >= total_GPUs
where
DP = total_GPUs / (TP * PP * EP)
.
-
on shared filesystem for multi-node SFT: The default nemo cache (
)
is container-local. Multi-node SFT with packed sequences prepares
files on one node
that are invisible to others. Set
export NEMO_HOME=<SHARED_FS>/cache/nemo
so packed data
is shared. Without this, ranks on other nodes fail with
TypeError: 'NoneType' object is not an iterator
.
Full Template
bash
#!/bin/bash
# ==============================================================================
# <MODEL_NAME> <pretrain|sft> — <Framework: MLM | Megatron Bridge>
#
# Default: TP<X> PP<Y> EP<Z>, NNODES=<N> (<N*8> GPUs), MBS=<M>, GBS=<G>
#
# Usage:
# sbatch <script_name>.sh
# ==============================================================================
#SBATCH --job-name=<job-name>
#SBATCH --nodes=<NNODES>
#SBATCH --ntasks-per-node=1
#SBATCH --gpus-per-node=8
#SBATCH --time=00:30:00
#SBATCH --account=<YOUR_ACCOUNT>
#SBATCH --partition=batch
#SBATCH --output=<SHARED_FS>/logs/<job_name>_%j.log
#SBATCH --exclusive
# ── Container ────────────────────────────────────────────────────────────
CONTAINER_IMAGE="<PATH_TO_YOUR_CONTAINER>.sqsh"
CONTAINER_MOUNTS="<SHARED_FS>:<SHARED_FS>,<PATH_TO_MEGATRON_BRIDGE>:/opt/Megatron-Bridge,<PATH_TO_DATA>:/opt/data"
# ── Paths ────────────────────────────────────────────────────────────────
WORKDIR="/opt/Megatron-Bridge"
LOGDIR="<SHARED_FS>/logs/<logdir_name>"
DATA_PATH="<PATH_TO_PREPROCESSED_DATA>/dclm_01_01_text_document"
# ── Parallelism ──────────────────────────────────────────────────────────
TP=1; PP=1; EP=1
# ── Training ─────────────────────────────────────────────────────────────
MBS=1; GBS=256
SEQ=4096
SEED=1234
TRAIN_ITERS=20
# ── Tokens / Caches ──────────────────────────────────────────────────────
export GH_TOKEN=<YOUR_GITHUB_TOKEN>
export HF_TOKEN=<YOUR_HF_TOKEN>
export HF_HOME=<SHARED_FS>/HF_HOME
export UV_CACHE_DIR="<SHARED_FS>/uv_cache"
export NEMO_HOME="<SHARED_FS>/cache/nemo"
# ── Build training command ───────────────────────────────────────────────
TRAIN_CMD="
export CUDA_DEVICE_MAX_CONNECTIONS=1 && \
export NVTE_ALLOW_NONDETERMINISTIC_ALGO=1 && \
export PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True && \
export NCCL_NVLS_ENABLE=0 && \
export GH_TOKEN=$GH_TOKEN && \
export HF_TOKEN=$HF_TOKEN && \
export HF_HOME=$HF_HOME && \
export UV_CACHE_DIR=$UV_CACHE_DIR && \
export NEMO_HOME=$NEMO_HOME && \
wandb login \$WANDB_API_KEY && \
mkdir -p $LOGDIR && \
cd $WORKDIR && \
uv sync && \
<TRAINING_COMMAND_HERE>
"
echo \"======================================\"
echo \"<MODEL_NAME> <Framework> Pretrain\"
echo \"Job: \$SLURM_JOB_ID | Nodes: \$SLURM_JOB_NUM_NODES\"
echo \"TP=\$TP PP=\$PP EP=\$EP MBS=\$MBS GBS=\$GBS\"
echo \"======================================\"
# Phase 1: Single-process uv sync to build/populate the shared cache
srun --mpi=pmix -N 1 --ntasks=1 \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "cd $WORKDIR && uv sync"
# Phase 2: Full multi-node run (uv sync in TRAIN_CMD is a fast no-op)
srun --mpi=pmix --no-kill \
--container-image="$CONTAINER_IMAGE" \
--container-mounts="$CONTAINER_MOUNTS" \
--no-container-mount-home \
bash -c "$TRAIN_CMD" 2>&1 | tee "$LOGDIR/<prefix>_${SLURM_JOB_ID}.log"
echo ""
echo "======================================"
echo "Done. Losses:"
echo "======================================"
grep -E "iteration\s+" "$LOGDIR/<prefix>_${SLURM_JOB_ID}.log" | grep -iE "lm loss|reduced_train_loss" | head -25
Bridge-Specific TRAIN_CMD Body
bash
rm -rf nemo_experiments && \
uv run python -m torch.distributed.run \
--nproc_per_node=8 \
--nnodes=\${SLURM_JOB_NUM_NODES} \
--node_rank=\${SLURM_NODEID} \
scripts/training/run_recipe.py \
--recipe <recipe_name> \
model.tensor_model_parallel_size=$TP \
model.pipeline_model_parallel_size=$PP \
...overrides...
MLM-Specific TRAIN_CMD Body
bash
PYTHONPATH=${WORKDIR}/3rdparty/Megatron-LM:\${PYTHONPATH:-} \
uv run python -m torch.distributed.run \
--nproc_per_node=8 \
--nnodes=\${SLURM_JOB_NUM_NODES} \
--node_rank=\${SLURM_NODEID} \
3rdparty/Megatron-LM/pretrain_gpt.py \
--tensor-model-parallel-size $TP \
--pipeline-model-parallel-size $PP \
...args...