bioskills
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ChinesebioSkills Installer
bioSkills 安装器
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
这是一款元技能工具，可安装完整的bioSkills技能集合（覆盖62个类别的425项技能），用于生物信息学分析。
Installation
安装方法
Run the bundled install script to download and install all bioSkills:
bash
bash scripts/install-bioskills.shOr install only specific categories:
bash
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"运行捆绑的安装脚本，即可下载并安装所有bioSkills技能：
bash
bash scripts/install-bioskills.sh也可仅安装特定类别：
bash
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"What Gets Installed
安装内容
| Category Group | Categories | Skills |
|---|---|---|
| Sequence & Alignment | sequence-io, sequence-manipulation, alignment, alignment-files, database-access | 40 |
| Read Processing | read-qc, read-alignment | 11 |
| RNA-seq & Expression | differential-expression, rna-quantification, expression-matrix | 14 |
| Single-Cell & Spatial | single-cell, spatial-transcriptomics | 25 |
| Variant Analysis | variant-calling, copy-number, phasing-imputation | 21 |
| Epigenomics | chip-seq, atac-seq, methylation-analysis, hi-c-analysis | 25 |
| Metagenomics & Microbiome | metagenomics, microbiome | 13 |
| Genomics & Assembly | genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design | 29 |
| Regulatory & Causal | gene-regulatory-networks, causal-genomics, rna-structure | 13 |
| Temporal & Ecological | temporal-genomics, ecological-genomics | 11 |
| Immunology & Clinical | immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics | 25 |
| Specialized Omics | proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy | 36 |
| RNA Biology | small-rna-seq, epitranscriptomics, clip-seq, ribo-seq | 20 |
| Phylogenetics & Evolution | phylogenetics, population-genetics, comparative-genomics | 16 |
| Structural & Systems | structural-biology, systems-biology | 11 |
| Screens & Cytometry | crispr-screens, flow-cytometry, imaging-mass-cytometry | 22 |
| Pathway & Integration | pathway-analysis, multi-omics-integration, restriction-analysis | 14 |
| Infrastructure | data-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing | 39 |
| Workflows | End-to-end pipelines (FASTQ to results) | 40 |
| 类别组 | 具体类别 | 技能数量 |
|---|---|---|
| 序列与比对 | sequence-io、sequence-manipulation、alignment、alignment-files、database-access | 40 |
| 读段处理 | read-qc、read-alignment | 11 |
| RNA-seq与表达分析 | differential-expression、rna-quantification、expression-matrix | 14 |
| 单细胞与空间组学 | single-cell、spatial-transcriptomics | 25 |
| 变异分析 | variant-calling、copy-number、phasing-imputation | 21 |
| 表观基因组学 | chip-seq、atac-seq、methylation-analysis、hi-c-analysis | 25 |
| 宏基因组学与微生物组 | metagenomics、microbiome | 13 |
| 基因组学与组装 | genome-assembly、genome-annotation、genome-intervals、genome-engineering、primer-design | 29 |
| 调控与因果分析 | gene-regulatory-networks、causal-genomics、rna-structure | 13 |
| 时间与生态基因组学 | temporal-genomics、ecological-genomics | 11 |
| 免疫学与临床 | immunoinformatics、clinical-databases、tcr-bcr-analysis、epidemiological-genomics | 25 |
| 专门组学 | proteomics、metabolomics、alternative-splicing、chemoinformatics、liquid-biopsy | 36 |
| RNA生物学 | small-rna-seq、epitranscriptomics、clip-seq、ribo-seq | 20 |
| 系统发育与进化 | phylogenetics、population-genetics、comparative-genomics | 16 |
| 结构与系统生物学 | structural-biology、systems-biology | 11 |
| 筛选与细胞计数 | crispr-screens、flow-cytometry、imaging-mass-cytometry | 22 |
| 通路与整合分析 | pathway-analysis、multi-omics-integration、restriction-analysis | 14 |
| 基础设施 | data-visualization、machine-learning、workflow-management、reporting、experimental-design、long-read-sequencing | 39 |
| 工作流 | 端到端流程（从FASTQ到结果） | 40 |
After Installation
安装后说明
Once installed, skills are automatically triggered based on the task at hand. Example requests:
- "I have RNA-seq counts from treated vs control samples - find the differentially expressed genes"
- "Call variants from this whole genome sequencing BAM file"
- "Cluster my single-cell RNA-seq data and find marker genes"
- "Predict the structure of this protein sequence"
- "Run a metagenomics classification on these shotgun reads"
安装完成后，系统会根据当前任务自动触发相应技能。示例请求：
- "我有处理组与对照组的RNA-seq计数数据，请找出差异表达基因"
- "从这个全基因组测序BAM文件中检测变异"
- "对我的单细胞RNA-seq数据进行聚类并找到标记基因"
- "预测该蛋白质序列的结构"
- "对这些鸟枪法测序读段进行宏基因组分类"
Source
来源
Related Skills
相关技能
After installation, 425 individual skills become available across these categories:
sequence-io, sequence-manipulation, database-access, alignment, alignment-files,
variant-calling, phylogenetics, differential-expression, structural-biology,
single-cell, pathway-analysis, restriction-analysis, methylation-analysis,
chip-seq, metagenomics, long-read-sequencing, read-qc, read-alignment,
rna-quantification, genome-assembly, genome-intervals, data-visualization,
expression-matrix, copy-number, proteomics, flow-cytometry, population-genetics,
multi-omics-integration, spatial-transcriptomics, machine-learning,
workflow-management, microbiome, metabolomics, phasing-imputation,
primer-design, hi-c-analysis, imaging-mass-cytometry, atac-seq,
crispr-screens, reporting, experimental-design, clinical-databases,
tcr-bcr-analysis, small-rna-seq, epitranscriptomics, clip-seq, ribo-seq,
genome-engineering, systems-biology, epidemiological-genomics,
immunoinformatics, comparative-genomics, alternative-splicing,
chemoinformatics, liquid-biopsy, genome-annotation, gene-regulatory-networks,
causal-genomics, rna-structure, temporal-genomics, ecological-genomics, workflows
安装完成后，将解锁以下类别下的425项独立技能：
sequence-io, sequence-manipulation, database-access, alignment, alignment-files,
variant-calling, phylogenetics, differential-expression, structural-biology,
single-cell, pathway-analysis, restriction-analysis, methylation-analysis,
chip-seq, metagenomics, long-read-sequencing, read-qc, read-alignment,
rna-quantification, genome-assembly, genome-intervals, data-visualization,
expression-matrix, copy-number, proteomics, flow-cytometry, population-genetics,
multi-omics-integration, spatial-transcriptomics, machine-learning,
workflow-management, microbiome, metabolomics, phasing-imputation,
primer-design, hi-c-analysis, imaging-mass-cytometry, atac-seq,
crispr-screens, reporting, experimental-design, clinical-databases,
tcr-bcr-analysis, small-rna-seq, epitranscriptomics, clip-seq, ribo-seq,
genome-engineering, systems-biology, epidemiological-genomics,
immunoinformatics, comparative-genomics, alternative-splicing,
chemoinformatics, liquid-biopsy, genome-annotation, gene-regulatory-networks,
causal-genomics, rna-structure, temporal-genomics, ecological-genomics, workflows