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Found 7 Skills
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Transform source material (articles, papers, news, tech content, or any topic) into short, dramatic, entertaining conversational snippets with delivery stage directions. Extracts ONE interesting nugget, dramatizes it with storytelling techniques, and annotates with pauses, voice modulation, gestures, and expressions so even the most introverted engineer can deliver it naturally and engagingly to his girlfriend or partner. Use when: - User wants to turn an article or topic into something to tell their girlfriend/partner - User asks to make technical content conversational or girlfriend-friendly - User wants a casual script for sharing something interesting - User mentions "say to her", "tell her about", "explain to my girlfriend" - User wants dinner conversation material or talking points from source material Triggers: "say to her", "tell my girlfriend", "girlfriend-friendly", "make it conversational", "how do I explain this to her", "turn this into something I can say", "dinner conversation"
Read/write FASTA, GenBank, FASTQ files. Sequence manipulation (complement, translate). Indexed random access via faidx. For NGS pipelines (SAM/BAM/VCF), use pysam. For BLAST, use gget or blat-integration.