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Runs the Metabase semantic checker against a tree of Representation Format YAML files to verify that all references resolve — cross-entity references (collection_id, dashboard_id, parent_id, parameter source cards, snippet references, transform tags, etc.) and references to columns inside MBQL and native queries. Use when the user asks to "semantic check", "check references", "validate queries against the schema", or diagnose a broken reference. Requires database metadata on disk (by default `.metabase/metadata.json`).