Search Results: mass-spectrometry-data

Found 2 Skills

Data Processingmims-harvard/tooluniverse

tooluniverse-proteomics-data-retrieval

Find and retrieve proteomics datasets from public repositories including MassIVE and ProteomeXchange (which aggregates PRIDE, PeptideAtlas, jPOST, and iProX). Search by species, keyword, or accession. Get detailed dataset metadata including instruments, publications, species, modifications, and file counts. Use when asked to find proteomics datasets, search for mass spectrometry data, look up ProteomeXchange or MassIVE accessions, or discover publicly available proteomics experiments for a given organism or topic.

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Data Processingmims-harvard/tooluniverse

tooluniverse-proteomics-analysis

Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translational modifications (PTMs), and protein-protein interactions. Processes MaxQuant, Spectronaut, DIA-NN, and other MS platform outputs. Performs normalization, statistical analysis, pathway enrichment, and integration with transcriptomics. Use when analyzing proteomics data, comparing protein abundance between conditions, identifying PTM changes, studying protein complexes, integrating protein and RNA data, discovering protein biomarkers, or conducting quantitative proteomics experiments.

🇺🇸|EnglishTranslated