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Found 2 Skills
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.
Generate correct code for whole-slide image (WSI) analysis using TIAToolbox and foundation models (H-optimus-0, UNI, Prov-GigaPath). Triggers on requests involving whole-slide images, WSI, digital pathology, histopathology, SVS/NDPI/pyramidal TIFF, tissue segmentation, patch extraction, stain normalization, H-optimus-0, TIAToolbox, CAMELYON16/17, SlideGraph, MIL aggregation, HoVer-Net, PanNuke, or SageMaker deployment of pathology models. Produces deterministic commands and Python snippets for slide-info inspection, tissue masking, tile extraction at specified mpp, foundation-model feature embedding, slide-level aggregation, and regulated cloud inference.