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Found 141 Skills
Writes or rewrites README.md files tailored to the project type (CLI, library, app, framework, monorepo, or skill bundle). Discovers project context, selects the right structure, writes section by section, and validates against quality checks. Use when creating a README, writing a README from scratch, rewriting a bad README, bootstrapping project documentation, or asking "write a README for this project."
Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics. Computes treeness, RCV, treeness/RCV, parsimony informative sites, evolutionary rate, DVMC, tree length, alignment gap statistics, GC content, and bootstrap support using PhyKIT, Biopython, and DendroPy. Performs NJ/UPGMA/parsimony tree construction, Robinson-Foulds distance, Mann-Whitney U tests, and batch analysis across gene families. Integrates with ToolUniverse for sequence retrieval (NCBI, UniProt, Ensembl) and tree annotation. Use when processing FASTA/PHYLIP/Nexus/Newick files, computing phylogenetic metrics, comparing taxa groups, or answering questions about alignments, trees, parsimony, or molecular evolution.
BAZDMEG Method workflow checkpoint system for AI-assisted development. Enforce quality gates at three phases: pre-code, post-code, and pre-PR. Use when: (1) starting a new feature or bug fix, (2) finishing AI-generated code before review, (3) preparing a pull request, (4) running a planning interview, (5) auditing automation readiness, (6) preventing AI slop, (7) session bootstrap, (8) source rank, (9) domain gates, (10) bugbook. Triggers: 'bazdmeg', 'pre-code checklist', 'post-code checklist', 'pre-PR checklist', 'planning interview', 'quality gates', 'session bootstrap', 'source rank', 'domain gates', 'bugbook'.
Use when raising startup capital (pre-seed through Series C+): decide raise vs bootstrap, size a round, build a deck + data room, run investor targeting/outreach, negotiate SAFEs/term sheets, manage diligence, and set investor reporting cadence post-close.
Create and maintain a repository-root ROADMAP.md as the single source of truth for project milestones and accepted plans. Use when bootstrapping any new project, accepting/completing a plan, defining or updating milestone/version roadmaps, marking milestones as reached/changed/de-scoped, or answering where roadmap and milestone status should be referenced.
Advanced theming for Shiny apps using bslib and Bootstrap 5. Use when customizing app appearance with bs_theme(), Bootswatch themes, custom colors, typography, brand.yml integration, Bootstrap Sass variables, custom Sass/CSS rules, dark mode and color modes, dynamic theme switching, real-time theming, theme inspection, or making R plots match the app theme with thematic.
Scaffolds a production-ready Next.js turborepo with TypeScript, Tailwind CSS, shadcn CLI, Blode UI components from ui.blode.co, blode-icons-react, Biome, Ultracite, and Vercel deployment. Use when creating a new Next.js app, bootstrapping a turborepo, scaffolding a web project, starting a new website, or asking "create a Next.js project."
Claude Code + Codex parallel pipeline for bootstrapping Trellis coding specs. CC analyzes the repo with GitNexus (knowledge graph) + ABCoder (AST), creates Trellis task PRDs with full architectural context and MCP tool instructions, then Codex agents run those tasks in parallel to fill spec files. Use when: bootstrapping coding guidelines, setting up Trellis specs, 'bootstrap specs for codex', 'create spec tasks', 'CC + Codex spec pipeline', 'initialize coding guidelines with code intelligence'. Also triggers when user wants to set up GitNexus or ABCoder MCP for multi-agent spec generation.
Scaffold or continue a software project with a Harness-style workflow. Use when the user wants a new app or repo, a structured bootstrap, or milestone-driven execution from PRD through implementation. Supports greenfield and existing codebases across web, iOS, CLI, agent, and desktop projects.
Use when bootstrapping skill-loop in a repository, creating a GitHub issue loop starter, or writing and updating skill-loop.yml and starter skills.
Agent onboarding automation for AIBTC first-hour setup. Use when a new or existing agent needs a structured bootstrap flow: wallet readiness, AIBTC registration check, heartbeat health checks/check-in, safe skill-pack installs, and a one-command doctor summary with next actions.
Maintains persistent codebase knowledge across sessions through a structured knowledge graph stored in a local Obsidian vault (.doctrack/). Use this skill whenever you have just made meaningful code changes (new features, modified components, refactoring, bug fixes) to update the project's documentation. Also use it when the user asks to document code, update docs, sync documentation, initialize documentation for an existing project, or when you want to understand the existing codebase structure at the start of a session. This skill should be used proactively after any significant code modification — don't wait for the user to ask. If you changed code, update the docs. Think of it as your long-term memory system: read before working, write after changing. Also use this when a user says "doctrack init", "doctrack refresh", "refresh docs", "update docs", "sync docs", "initialize docs", "document this project", or wants to bootstrap documentation for a codebase that has no .doctrack/ vault yet.