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Found 63 Skills
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
Library for bioinformatics and community ecology statistics. Provides data structures and algorithms for sequences, alignments, phylogenetics, and diversity analysis. Essential for microbiome research and ecological data science. Use for alpha/beta diversity metrics, ordination (PCoA), phylogenetic trees, sequence manipulation (DNA/RNA/Protein), distance matrices, PERMANOVA, and community ecology analysis.
Format code on the current branch using Biome. Use when asked to format, lint, or clean up code before committing or creating a PR.
Implements and enforces code quality gates for TypeScript/React projects. Use when setting up Biome/ESLint/TypeScript, configuring pre-commit hooks (Husky), fixing lint errors, or running quality checks. Examples - "setup code quality", "fix lint errors", "configure Biome", "run quality checks".
TypeScript/JavaScript project workflow guidelines using Bun package manager. Triggers on `.ts`, `.tsx`, `bun`, `package.json`, TypeScript. Covers bun run, bun install, bun add, tsconfig.json patterns, ESM/CommonJS modules, type safety, Biome formatting, naming conventions (PascalCase, camelCase, UPPER_SNAKE_CASE), project structure, error handling, environment variables, async patterns, and code quality tools. Activate when working with TypeScript files (.ts, .tsx), JavaScript files (.js, .jsx), Bun projects, tsconfig.json, package.json, bun.lock, or Bun-specific tooling.
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
JavaScript ES2024+ development specialist covering Node.js 22 LTS, Bun 1.x (serve, SQLite, S3, shell, test), Deno 2.x, testing (Vitest, Jest), linting (ESLint 9, Biome), and backend frameworks (Express, Fastify, Hono). Use when developing JavaScript APIs, web applications, or Node.js projects.
SonarQube/SonarCloud integration for continuous code quality. Setup, configuration, quality gates, and CI/CD integration. USE WHEN: user mentions "SonarQube", "SonarCloud", "quality gates", asks about "code coverage", "technical debt", "code smells", "sonar-project.properties", "SonarScanner" DO NOT USE FOR: ESLint/Biome - use linting skills, OWASP security - use security skills, testing tools - use Vitest/Playwright skills
Guides the agent through migrating Capacitor apps from discontinued Ionic Enterprise SDK plugins (Auth Connect, Identity Vault, Secure Storage) to their Capawesome alternatives (OAuth, Biometrics, Secure Preferences, SQLite). Covers dependency detection, side-by-side API mapping, code replacement, and platform-specific configuration for each plugin pair. Do not use for migrating Capacitor apps or plugins to a newer version, setting up Capawesome Cloud, or non-Capacitor mobile frameworks.
Build and publish npm packages using Bun as the primary toolchain with npm-compatible output. Use when the user wants to create a new npm library, set up a TypeScript package for publishing, configure build/test/lint tooling for a package, fix CJS/ESM interop issues, or publish to npm. Covers scaffolding, strict TypeScript, Biome + ESLint linting, Vitest testing, Bunup bundling, and publishing workflows. Keywords: npm, package, library, publish, bun, bunup, esm, cjs, exports, typescript, biome, vitest, changesets.
Build and publish npx-executable CLI tools using Bun as the primary toolchain with npm-compatible output. Use when the user wants to create a new CLI tool, set up a command-line package for npx execution, configure argument parsing and terminal output, or publish a CLI to npm. Covers scaffolding, citty arg parsing, sub-commands, terminal UX, strict TypeScript, Biome + ESLint linting, Vitest testing, Bunup bundling, and publishing workflows. Keywords: npx, cli, command-line, binary, bin, tool, bun, citty, commander, terminal, publish, typescript, biome, vitest.
Detect and analyze adverse drug event signals using FDA FAERS data, drug labels, disproportionality analysis (PRR, ROR, IC), and biomedical evidence. Generates quantitative safety signal scores (0-100) with evidence grading. Use for post-market surveillance, pharmacovigilance, drug safety assessment, adverse event investigation, and regulatory decision support.