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Found 45 Skills
Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.
Retrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search. Use when you need to fetch biological sequences by accession, gene name, locus tag, PubMed ID, or patent number.
Find and synthesize research papers, whitepapers, PDFs, technical reports, and academic sources with Firecrawl Research, using semantic paper search, related-paper expansion, and in-body verification over Firecrawl's paper index — largely biomedical and life-science literature from PubMed, bioRxiv, and medRxiv, plus arXiv preprints in CS, physics, and math. Use when the user wants a literature review, systematic review, survey of studies, paper summary, research landscape, or sourced synthesis from scholarly and industry publications, including clinical, drug, gene, disease, epidemiology, and public-health topics. Prefer this over a general web-research workflow whenever the evidence base is published papers rather than web pages.
Search academic papers across arXiv, PubMed, Semantic Scholar, bioRxiv, medRxiv, Google Scholar, and more. Get BibTeX citations, download PDFs, analyze citation networks. Use for literature reviews, finding papers, and academic research.
Use when selecting, installing, configuring, smoke-testing, documenting, or troubleshooting MCP servers for academic search, arXiv, Semantic Scholar, OpenAlex, Crossref, PubMed, Zotero, Overleaf, Google Scholar, paper metadata, or scholarly source tooling.
Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID lookups, abstracts, full text, open access, preprints, citation graphs, author search, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X" or "look up this DOI".
Use when the user asks for a literature review, academic deep dive, research report, state-of-the-art survey, topic scoping, comparative analysis of methods/papers, grant background, or any request that needs multi-source scholarly evidence with citations. Also trigger proactively when a user question clearly requires academic grounding (e.g. "what's known about X", "compare approach A vs B in the literature", "summarize the field of Y"). Runs an 8-phase (Phase 0..7), script-driven research workflow across 7 federated sources (OpenAlex, arXiv, Crossref, PubMed, DBLP, bioRxiv, Exa) with optional Semantic Scholar / Brave MCP enrichment, with deduplication, transparent ranking, dual-backend citation chasing (OpenAlex + Semantic Scholar), self-critique, and structured report output with verifiable citations.
Pulls DOIs, arXiv ids, PMIDs, PMCIDs and ISBNs out of free text, deduplicated and normalized, with the character offset of each first occurrence. Called as POST /v1/text/extract-citations, it takes text, kinds and returns count, citations, byKind. An agent handed a references section, an email or a PDF dump has to find the identifiers before it can look any of them up, and a model asked to do it by reading invents DOIs that resolve to nothing. The catalog already answers `crossref.doi-metadata` and `pubmed.citation-search`; neither could tell you what to ask them about. Reading this schema and dry-running the call are free and need no wallet; a real call costs $0.003, paid in USDC on Base over x402.
This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature".
OpenBio API for biological data access and computational biology tools. Use when: (1) Querying biological databases (PDB, UniProt, ChEMBL, etc.), (2) Searching scientific literature (PubMed, bioRxiv, arXiv), (3) Running structure prediction (Boltz, Chai, ProteinMPNN), (4) Performing pathway/enrichment analysis, (5) Designing molecular biology experiments (primers, cloning), (6) Analyzing variants and clinical data.
Evidence-based Drug-Drug Interaction (DDI) assessment skill modeled after the Micromedex Drug-Reax methodology. Trigger this skill whenever the user types /drug-drug, mentions "drug interaction", "DDI", "drug-drug", "can I take X with Y", "interaction between", "交互作用", "併用", or asks whether two medications can be used together. This skill performs systematic literature retrieval via PubMed, CrossRef, and WebSearch, then produces a structured assessment report with Severity, Documentation, Onset, Mechanism, Clinical Effects, and Management — mirroring the Micromedex Drug-Reax classification framework. Even casual questions like "is it safe to combine A and B" should trigger this skill.
Produce an intensive, cited analytical report: executive summary, multi-angle findings, contrarian views, open questions, and full sources. Use only when the user needs rigorous synthesis of a complex topic (scientific, technical, policy, or market-analytical) that cannot be answered with a short search, and wants a formal written report, not a recommendation list. Do not use for product picks, top-N lists, quick lookups, or routine "find out about X" tasks. If the request does not clearly need this kind of report, do not use this skill. Do not use for a literature review over published papers. This skill collects evidence from the open web. A request for the literature on a biomedical, clinical, life-science, or other scientific topic — papers, studies, trials, preprints — belongs to firecrawl-research-papers, which queries Firecrawl's paper index (PubMed, bioRxiv, medRxiv, arXiv) instead of searching websites.