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Found 1,702 Skills
Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
Comprehensive guide for creating software diagrams using Mermaid syntax. Use when users need to create, visualize, or document software through diagrams including class diagrams (domain modeling, object-oriented design), sequence diagrams (application flows, API interactions, code execution), flowcharts (processes, algorithms, user journeys), entity relationship diagrams (database schemas), C4 architecture diagrams (system context, containers, components), state diagrams, git graphs, pie charts, gantt charts, or any other diagram type. Triggers include requests to "diagram", "visualize", "model", "map out", "show the flow", or when explaining system architecture, database design, code structure, or user/application flows.
ClickHouse database patterns, query optimization, analytics, and data engineering best practices for high-performance analytical workloads.
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
Build Azure Cosmos DB NoSQL services with Python/FastAPI following production-grade patterns. Use when implementing database client setup with dual auth (DefaultAzureCredential + emulator), service layer classes with CRUD operations, partition key strategies, parameterized queries, or TDD patterns for Cosmos. Triggers on phrases like "Cosmos DB", "NoSQL database", "document store", "add persistence", "database service layer", or "Python Cosmos SDK".
Master SQL query optimization, indexing strategies, and EXPLAIN analysis to dramatically improve database performance and eliminate slow queries. Use when debugging slow queries, designing database schemas, or optimizing application performance.
Manage Supabase projects, databases, migrations, Edge Functions, and storage using the `supabase` CLI.
Prisma CLI commands reference covering all available commands, options, and usage patterns. Use when running Prisma CLI commands, setting up projects, generating client, running migrations, or managing databases. Triggers on "prisma init", "prisma generate", "prisma migrate", "prisma db", "prisma studio".
Migrates Oracle PL/SQL stored procedures to PostgreSQL PL/pgSQL. Translates Oracle-specific syntax, preserves method signatures and type-anchored parameters, leverages orafce where appropriate, and applies COLLATE "C" for Oracle-compatible text sorting. Use when converting Oracle stored procedures or functions to PostgreSQL equivalents during a database migration.
Execute read-only SQL queries against multiple MySQL databases. Use when: (1) querying MySQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.