Loading...
Loading...
Found 20 Skills
Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence metrics (pLDDT), domain boundary analysis, or disorder assessment. Do not use if the user only has a protein name, gene name, or amino acid sequence — ask for a UniProt ID first.
Precise, instant code structure queries for active development — answer 'who depends on this interface before I refactor it', 'how many modules break if I change this', 'what is the real impact radius of this feature change', 'which module is the true high-coupling hotspot in this legacy codebase'. Essential before any interface change, continuous refactoring task, sprint work estimation, or when navigating unfamiliar or large legacy codebases. Requires Python 3.10+ and shell. Use nexus-mapper instead when building a full .nexus-map/ knowledge base.
Analyzes code architecture and structure — layer violations, circular dependencies, god objects, anemic domain models, missing boundaries, directory structure issues, and configuration problems. Generates severity-scored findings with fix prompts. Trigger phrases: "architecture review", "structure check", "layer analysis", "god class".
Analyze market structures across perfect competition, monopolistic competition, oligopoly, and monopoly to predict firm behavior and market outcomes. Use this skill when the user needs to classify a market's competitive structure, predict pricing behavior, evaluate antitrust implications, or understand why an industry behaves the way it does — even if they say 'why can they charge so much', 'is this market competitive', or 'will prices come down'.
Download and analyze structured Terraform plan JSON output from Terraform Cloud. Use when analyzing resource changes, diffing infrastructure, or programmatically inspecting plan details. Requires TFE_TOKEN environment variable.
Visualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform structural alignments or superposition, measure distances or contacts, highlight binding sites or active site residues, color by B-factor/pLDDT, or analyze protein-ligand interactions. Do not use for docking, molecular dynamics, or sequence-only analysis.
Brutally honest code review in the style of Linus Torvalds, focusing on data structures, simplicity, and pragmatism. Use when you want critical, no-nonsense feedback that prioritizes engineering fundamentals over style preferences.
Identify motif-level structures in a piece of information, expand abstract relationships back into concrete observable phenomena, and then use wind tunnel testing to verify key causal relationships and boundaries. USE WHEN user says 'find structure', 'what is the motif', 'structure wind tunnel', 'underlying structure', 'don’t just do AB testing', or wants to explore the generative mechanism behind a problem. Only expand cross-domain sources or multi-motif combinations when explicitly requested by the user. NOT FOR general summaries, single analogies, factual queries, or execution tasks with a clear unique solution.