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Found 42 Skills
Use when implementing production-quality bioinformatics software with proper error handling, logging, testing, and documentation, following software engineering best practices.
Code Reviewer Specialist. Use this to review PRs, check security, and ensure code quality standards before merging.
Use when writing any code - enforces clean architecture with descriptive names, real implementations, no backward compatibility concerns, and no lint suppressions
Implement tasks from the change, writing actual code following the specs and design. Trigger: When the orchestrator launches you to implement one or more tasks from a change.
L3 Worker. Reviews task implementation for quality, code standards, test coverage. Creates [BUG] tasks for side-effect issues found outside task scope. Sets task Done or To Rework. Usually invoked by ln-400 with isolated context, can also review a specific task on user request.
Create or update the project constitution through interactive phase-based
Validates code changes against DeepRead's mandatory patterns and standards defined in AGENTS.md. Use this after writing or modifying code to catch violations before committing.
Perform a code review with linting, standards checking, and priority-ranked findings
Audit code compliance with AGENTS.md project guidelines. Checks adherence to project conventions, naming, patterns, and standards. Read-only analysis. Use before PR. Triggers: review agents.md adherence, check guidelines, project standards compliance.
Automatically detect code quality issues and provide improvement recommendations
Use when developing custom Checkstyle checks, filters, and plugin integrations for project-specific Java code standards.
Deterministic 3-phase GitHub PR review comment extraction: Authenticate, Mine, Validate. Use when mining tribal knowledge from PR reviews, extracting coding standards from review history, or building datasets for the Code Archaeologist agent. Use for "mine PRs", "extract review comments", "tribal knowledge", or "PR review history". Do NOT use for analyzing patterns, generating rules, or interpreting comments — that is the Code Archaeologist agent's responsibility.