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Found 1,702 Skills
Use when the user asks to design database schemas, plan data migrations, optimize queries, choose between SQL and NoSQL, or model data relationships.
This skill should be used when the user asks to "optimize SQL queries", "explore database schemas", "generate migration SQL", "analyze query performance", or "document database structure".
Query the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constraint metrics (pLI, LOEUF) to assess loss-of-function intolerance, finding variants in a genomic region or gene, or querying structural variants. Don't use for analyzing individual patient genomes, tracking somatic mutations in cancer (use COSMIC), or requesting raw sequencing reads (use ENA).
Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs. Covers physics/astronomy (NASA, NIST, SDSS, SIMBAD), earth/environment (USGS, NOAA, EPA), chemistry/drugs (PubChem, ChEMBL, DrugBank, FDA, KEGG, ZINC, BindingDB), materials (Materials Project, COD), biology/genomics (Reactome, UniProt, STRING, Ensembl, NCBI Gene, GEO, GTEx, PDB, AlphaFold, InterPro, BioGRID, Gene Ontology, dbSNP, gnomAD, ENCODE, Human Protein Atlas, Human Cell Atlas), disease/clinical (COSMIC, Open Targets, ClinicalTrials.gov, OMIM, ClinVar, GDC/TCGA, cBioPortal, DisGeNET, GWAS Catalog), regulatory (FDA, USPTO, SEC EDGAR), economics/finance (FRED, World Bank, US Treasury), demographics (US Census, Eurostat, WHO). Use when looking up compounds, genes, proteins, pathways, variants, clinical trials, patents, economic indicators, or any public database API query.
Work with MongoDB (document database, BSON documents, aggregation pipelines, Atlas cloud) and PostgreSQL (relational database, SQL queries, psql CLI, pgAdmin). Use when designing database schemas, writing queries and aggregations, optimizing indexes for performance, performing database migrations, configuring replication and sharding, implementing backup and restore strategies, managing database users and permissions, analyzing query performance, or administering production databases.
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
Create and manage database migrations safely with rollback support. Use when modifying database schema, adding indexes, or managing database changes.
Guides the agent through async database integration with SQLAlchemy and Alembic migrations for FastAPI applications. Triggered when users ask to "set up a database", "create database models", "add SQLAlchemy", "create migrations", "run Alembic", "connect to PostgreSQL", "add a database layer", "create CRUD operations", "set up async database", or mention SQLAlchemy, Alembic, ORM, database models, async database, connection pool, or database migrations.
Build AI that answers questions about your database. Use when you need text-to-SQL, natural language database queries, a data assistant for non-technical users, AI-powered analytics, plain English database search, or a chatbot that talks to your database. Covers DSPy pipelines for schema understanding, SQL generation, validation, and result interpretation.
Vector database implementation for AI/ML applications, semantic search, and RAG systems. Use when building chatbots, search engines, recommendation systems, or similarity-based retrieval. Covers Qdrant (primary), Pinecone, Milvus, pgvector, Chroma, embedding generation (OpenAI, Voyage, Cohere), chunking strategies, and hybrid search patterns.