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Found 17 Skills
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
Use when creating an R modeling package that needs standardized preprocessing for formula, data frame, matrix, and recipe interfaces. Covers: mold() for training data preprocessing, forge() for prediction data validation, blueprints, model constructors, spruce functions for output formatting.
Credit risk data cleaning and variable screening pipeline for pre-loan modeling. Use when working with raw credit data that needs quality assessment, missing value analysis, or variable selection before modeling. it covers data loading and formatting, abnormal period filtering, missing rate calculation, high-missing variable removal,low-IV variable filtering, high-PSI variable removal, Null Importance denoising, high-correlation variable removal, and cleaning report generation. Applicable scenarios arecredit risk data cleaning, variable screening, pre-loan modeling preprocessing.
Auto-generate features with encodings, scaling, polynomial features, and interaction terms for ML pipelines.
Agent skill for data-ml-model - invoke with $agent-data-ml-model
Used for header-only preflight of one DICOM series folder before conversion or inference. Not for de-identification or clinical clearance.
Auto-detect and fix common Excel formatting issues like merged cells, inconsistent types, duplicate headers, and encoding problems.
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
Clean up messy spreadsheet data — trim whitespace, fix inconsistent casing, convert numbers-stored-as-text, standardize dates, remove duplicates, and flag mixed-type columns. Use when data is messy, inconsistent, or needs prep before analysis. Triggers on "clean this data", "clean up this sheet", "normalize this data", "fix formatting", "dedupe", "standardize this column", "this data is messy".
PDF data extraction tool. Use it when users mention "PDF extraction", "PDF to Markdown", "PDF parsing", "extract PDF content", "PDF to JSON", "RAG PDF". OpenDataLoader PDF is currently the top-ranked PDF parser in benchmark tests, supporting local mode (fast, deterministic) and hybrid AI mode (for complex tables, scanned documents, formulas), with output formats including Markdown, JSON (with bounding boxes), and HTML. It is suitable for scenarios where structured data needs to be extracted from PDFs for RAG/LLM pipelines, or where batch processing of PDF documents is required.